| Best Reconstructed Unknown Genomes |
This archive contains the genomic sequences of the best candidate per each group of the 63 unknown genome groups in the entire database. The selection of the best candidate genome per each unknown genome group was performed on the base of the ANI, completeness and contamination scores.
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| Best Reconstructed Known Genomes |
This archive contains the genomic sequences of the best candidate known reconstructed genomes in the entire database. The selection of the best candidate genome was performed on the base of the mash distance, completeness and contamination scores.
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| Complete Results |
Complete Results from pipeline analysis, without any filter on completeness and contamination among the reconstructed genomes. Warning: this file contains more data than the ones present on the database web interface
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| Snakemake Pipeline Results |
Entire set of results from the Snakemake pipeline.
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| Raw Sequence Files |
Bash script that downloads the entire set of raw shotgun sequence files (paired-end) used in our analysis of the mouse gut microbiota. These sequences have also been deposited on the SRA database under accession number PRJNA1137132. Full size of dataset is 188 GB.
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